Index

A B C F J O P V
All Classes and Interfaces|All Packages

A

addAllJsonSchemaPaths(Iterable<Path>) - Method in class org.phenopackets.phenopackettools.validator.jsonschema.JsonSchemaValidationWorkflowRunnerBuilder

Add JSON schemas in bulk.

addAllJsonSchemaUrls(List<URL>) - Method in class org.phenopackets.phenopackettools.validator.jsonschema.JsonSchemaValidationWorkflowRunnerBuilder

Add JSON schemas in bulk.

addJsonSchema(URL) - Method in class org.phenopackets.phenopackettools.validator.jsonschema.JsonSchemaValidationWorkflowRunnerBuilder

Register a JSON schema present at a given url to be used as a syntax validator.

addJsonSchema(Path) - Method in class org.phenopackets.phenopackettools.validator.jsonschema.JsonSchemaValidationWorkflowRunnerBuilder

Register a JSON schema present at a given path to be used as a syntax validator.

B

build() - Method in class org.phenopackets.phenopackettools.validator.jsonschema.JsonSchemaValidationWorkflowRunnerBuilder

Finish building the JsonSchemaValidationWorkflowRunner.

C

cohortBuilder() - Static method in class org.phenopackets.phenopackettools.validator.jsonschema.JsonSchemaValidationWorkflowRunner

F

familyBuilder() - Static method in class org.phenopackets.phenopackettools.validator.jsonschema.JsonSchemaValidationWorkflowRunner

J

jsonSchemaUrls - Variable in class org.phenopackets.phenopackettools.validator.jsonschema.JsonSchemaValidationWorkflowRunnerBuilder

JsonSchemaValidationWorkflowRunner<T extends com.google.protobuf.MessageOrBuilder> - Class in org.phenopackets.phenopackettools.validator.jsonschema

Validates if given top-level element satisfies the following criteria: data format requirements - for instance if the element is a valid JSON document if JSON input is provided basic Phenopacket schema syntax requirements - the requirements described by the reference documentation.

JsonSchemaValidationWorkflowRunnerBuilder<T extends com.google.protobuf.MessageOrBuilder> - Class in org.phenopackets.phenopackettools.validator.jsonschema

A builder for JsonSchemaValidationWorkflowRunner.

JsonSchemaValidationWorkflowRunnerBuilder() - Constructor for class org.phenopackets.phenopackettools.validator.jsonschema.JsonSchemaValidationWorkflowRunnerBuilder

O

org.phenopackets.phenopackettools.validator.jsonschema - module org.phenopackets.phenopackettools.validator.jsonschema

Defines a ValidationWorkflowRunner with base validation backed by a JSON schema.

org.phenopackets.phenopackettools.validator.jsonschema - package org.phenopackets.phenopackettools.validator.jsonschema

The package provides JsonSchemaValidationWorkflowRunner and JsonSchemaValidationWorkflowRunnerBuilder for validating phenopackets.

P

phenopacketBuilder() - Static method in class org.phenopackets.phenopackettools.validator.jsonschema.JsonSchemaValidationWorkflowRunner

V

validate(byte[]) - Method in class org.phenopackets.phenopackettools.validator.jsonschema.JsonSchemaValidationWorkflowRunner

validate(String) - Method in class org.phenopackets.phenopackettools.validator.jsonschema.JsonSchemaValidationWorkflowRunner

validate(T) - Method in class org.phenopackets.phenopackettools.validator.jsonschema.JsonSchemaValidationWorkflowRunner

validators() - Method in class org.phenopackets.phenopackettools.validator.jsonschema.JsonSchemaValidationWorkflowRunner

A B C F J O P V
All Classes and Interfaces|All Packages