org.intermine.bio.postprocess

Class CreateOverlapViewProcess

java.lang.Object

org.intermine.postprocess.PostProcessor

org.intermine.bio.postprocess.CreateOverlapViewProcess

public class CreateOverlapViewProcess
extends org.intermine.postprocess.PostProcessor

A task the replace the sequencefeatureoverlappingfeatures table with a view that uses the int4range type to calculate the overlaps.

Field Summary

Fields inherited from class org.intermine.postprocess.PostProcessor

osw

Constructor Summary

Constructors

Constructor and Description
CreateOverlapViewProcess(org.intermine.objectstore.ObjectStoreWriter osw) Create a new instance

Method Summary

Modifier and Type	Method and Description
void	postProcess() Main post-processing routine.

Methods inherited from class org.intermine.postprocess.PostProcessor

getObjectStoreWriter

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CreateOverlapViewProcess

public CreateOverlapViewProcess(org.intermine.objectstore.ObjectStoreWriter osw)

Create a new instance

Parameters:

osw - object store writer

Method Detail

postProcess

public void postProcess()
                 throws org.intermine.objectstore.ObjectStoreException

Main post-processing routine. Drop the sequencefeatureoverlappingfeatures table and replace it with a view that uses the int4range type to calculate the overlaps.

Specified by:

postProcess in class org.intermine.postprocess.PostProcessor

Throws:

org.intermine.objectstore.ObjectStoreException - if the objectstore throws an exception