org.intermine.bio.postprocess

Class CreateLocationOverlapIndexProcess

java.lang.Object

org.intermine.postprocess.PostProcessor

org.intermine.bio.postprocess.CreateLocationOverlapIndexProcess

public class CreateLocationOverlapIndexProcess
extends org.intermine.postprocess.PostProcessor

Create an index on the location table to be used for range queries. Uses the built-in int4range type.

Field Summary

Fields inherited from class org.intermine.postprocess.PostProcessor

osw

Constructor Summary

Constructors

Constructor and Description
CreateLocationOverlapIndexProcess(org.intermine.objectstore.ObjectStoreWriter osw) Create a new instance

Method Summary

Modifier and Type	Method and Description
void	postProcess() Main post-processing routine.

Methods inherited from class org.intermine.postprocess.PostProcessor

getObjectStoreWriter

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CreateLocationOverlapIndexProcess

public CreateLocationOverlapIndexProcess(org.intermine.objectstore.ObjectStoreWriter osw)

Create a new instance

Parameters:

osw - object store writer

Method Detail

postProcess

public void postProcess()
                 throws org.intermine.objectstore.ObjectStoreException

Main post-processing routine. Create an int4range index on the start and end columns of the of the location table. If Postgres is of version 9.3 or later this will be an SPGIST index.

Specified by:

postProcess in class org.intermine.postprocess.PostProcessor

Throws:

org.intermine.objectstore.ObjectStoreException - if the objectstore throws an exception