org.intermine.bio.postprocess

Class CreateChromosomeLocationsProcess

java.lang.Object

org.intermine.postprocess.PostProcessor

org.intermine.bio.postprocess.CreateChromosomeLocationsProcess

public class CreateChromosomeLocationsProcess
extends org.intermine.postprocess.PostProcessor

Calculate additional mappings between annotation after loading into genomic ObjectStore. Currently designed to cope with situation after loading ensembl, may need to change as other annotation is loaded. New Locations (and updated BioEntities) are stored back in originating ObjectStore.

Field Summary

Fields inherited from class org.intermine.postprocess.PostProcessor

osw

Constructor Summary

Constructors

Constructor and Description
CreateChromosomeLocationsProcess(org.intermine.objectstore.ObjectStoreWriter osw) Create a new instance

Method Summary

Modifier and Type	Method and Description
void	postProcess() Main post-processing routine.

Methods inherited from class org.intermine.postprocess.PostProcessor

getObjectStoreWriter

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CreateChromosomeLocationsProcess

public CreateChromosomeLocationsProcess(org.intermine.objectstore.ObjectStoreWriter osw)

Create a new instance

Parameters:

osw - object store writer

Method Detail

postProcess

public void postProcess()
                 throws org.intermine.objectstore.ObjectStoreException

Main post-processing routine.

Specified by:

postProcess in class org.intermine.postprocess.PostProcessor

Throws:

org.intermine.objectstore.ObjectStoreException - if the objectstore throws an exception