gov.nih.ncats.molwitch.cdk

Class ReaderFactory

java.lang.Object

gov.nih.ncats.molwitch.cdk.ReaderFactory

public class ReaderFactory
extends Object

A Factory class for making IIteratingChemObjectReaders. For some reason, CDK (as of 1.5.13) doesn't have a factory class that can guess the file format and return the appropriate IIteratingChemObjectReader for it, but it does have one for the non-iterating, read everything into memory Reader.

This is a very basic factory that can only determine a file encoded in SMILES format or MOL/SDF format. If the file is compressed, it must be uncompressed before it is given to this factory.

Author:

katzelda

Constructor Summary

Constructors

Constructor and Description
ReaderFactory()

Method Summary

Modifier and Type	Method and Description
static gov.nih.ncats.molwitch.cdk.ReaderFactory.GuessResult	create(BufferedReader reader, org.openscience.cdk.io.formats.IResourceFormat format)
static gov.nih.ncats.molwitch.cdk.ReaderFactory.GuessResult	guessReaderFor(BufferedReader reader) Get the file format for the contents of the given BufferedReader and return the appropriate IIteratingChemObjectReader for that format.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ReaderFactory

public ReaderFactory()

Method Detail

guessReaderFor

public static gov.nih.ncats.molwitch.cdk.ReaderFactory.GuessResult guessReaderFor(BufferedReader reader)
                                                                           throws IOException

Get the file format for the contents of the given BufferedReader and return the appropriate IIteratingChemObjectReader for that format.

Parameters:

reader - the BufferedReader to parse; can not be null and must support mark/reset.

Returns:

a new IIteratingChemObjectReader that can parse the input.

Throws:

IOException - if there is a problem reading the input data.

create

public static gov.nih.ncats.molwitch.cdk.ReaderFactory.GuessResult create(BufferedReader reader,
                                                                          org.openscience.cdk.io.formats.IResourceFormat format)
                                                                   throws IOException

Throws:

IOException