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A

AbstractPredictor - Class in ch.epfl.leb.defcon.predictors.internal

A base implementation for DEFCoN predictors.

AbstractPredictor() - Constructor for class ch.epfl.leb.defcon.predictors.internal.AbstractPredictor

C

ch.epfl.leb.defcon.ij - package ch.epfl.leb.defcon.ij

ch.epfl.leb.defcon.ij.gui - package ch.epfl.leb.defcon.ij.gui

ch.epfl.leb.defcon.predictors - package ch.epfl.leb.defcon.predictors

ch.epfl.leb.defcon.predictors.internal - package ch.epfl.leb.defcon.predictors.internal

ch.epfl.leb.defcon.utils - package ch.epfl.leb.defcon.utils

close() - Method in class ch.epfl.leb.defcon.predictors.internal.AbstractPredictor

Closes resources associated with this predictor.

close() - Method in interface ch.epfl.leb.defcon.predictors.Predictor

Closes resources associated with this predictor.

constant(Graph, String, Object, Class<T>) - Static method in class ch.epfl.leb.defcon.utils.GraphBuilder

Builds an Output tensor with a single scalar value.

constant(Graph, String, int) - Static method in class ch.epfl.leb.defcon.utils.GraphBuilder

Builds an Output tensor with a single scalar value.

D

DefaultPredictor - Class in ch.epfl.leb.defcon.predictors.internal

Makes density map predictions from images.

DefaultPredictor() - Constructor for class ch.epfl.leb.defcon.predictors.internal.DefaultPredictor

DensityCount - Class in ch.epfl.leb.defcon.ij

Computes a density map estimate for counting objects within an image.

DensityCount() - Constructor for class ch.epfl.leb.defcon.ij.DensityCount

E

expandDims(Graph, String, Output<T>, Output<Integer>) - Static method in class ch.epfl.leb.defcon.utils.GraphBuilder

Adds a dimension to a TensorFlow Output tensor.

F

finalize() - Method in class ch.epfl.leb.defcon.predictors.internal.AbstractPredictor

Failsafe in case the TensorFlow session has not been closed.

finalize() - Method in class ch.epfl.leb.defcon.predictors.internal.DefaultPredictor

Failsafe in case the TensorFlow session has not been closed.

G

getCount() - Method in class ch.epfl.leb.defcon.predictors.internal.DefaultPredictor

Returns the most recent count.

getCount() - Method in interface ch.epfl.leb.defcon.predictors.Predictor

Returns the most recent count.

getDensityMap() - Method in class ch.epfl.leb.defcon.predictors.internal.DefaultPredictor

Returns the most recently calculated density map prediction.

getDensityMap() - Method in interface ch.epfl.leb.defcon.predictors.Predictor

Returns the most recently calculated density map prediction.

getLocalCountMap() - Method in class ch.epfl.leb.defcon.predictors.internal.DefaultPredictor

Returns the most recently-calculated local count map.

getLocalCountMap() - Method in interface ch.epfl.leb.defcon.predictors.Predictor

Returns the most recently-calculated local count map.

getMaximumLocalCount(int) - Method in class ch.epfl.leb.defcon.predictors.internal.DefaultPredictor

Returns the maximum local count value.

getMaximumLocalCount(int) - Method in interface ch.epfl.leb.defcon.predictors.Predictor

Returns the maximum local count value.

GraphBuilder - Class in ch.epfl.leb.defcon.utils

Appends various operations to TensorFlow graphs.

GraphBuilder() - Constructor for class ch.epfl.leb.defcon.utils.GraphBuilder

I

ImageBitDepthException - Exception in ch.epfl.leb.defcon.predictors

Raised when an image with an invalid bit-depth is supplied to the predictor.

ImageBitDepthException(String) - Constructor for exception ch.epfl.leb.defcon.predictors.ImageBitDepthException

imageToTensor(ImagePlus) - Static method in class ch.epfl.leb.defcon.predictors.internal.AbstractPredictor

Converts an ImageJ image to a TensorFlow tensor.

isClosed - Variable in class ch.epfl.leb.defcon.predictors.internal.AbstractPredictor

Has the TensorFlow session been closed?

M

MaxCountFCN - Class in ch.epfl.leb.defcon.ij

MaxCountFCN() - Constructor for class ch.epfl.leb.defcon.ij.MaxCountFCN

N

NoLocalCountMapException - Exception in ch.epfl.leb.defcon.predictors

Raised when a predictor has not yet made a local count map estimation.

NoLocalCountMapException(String) - Constructor for exception ch.epfl.leb.defcon.predictors.NoLocalCountMapException

P

predict(ImageProcessor) - Method in class ch.epfl.leb.defcon.predictors.internal.DefaultPredictor

Makes a density map prediction from a 2D image.

predict(ImageProcessor) - Method in interface ch.epfl.leb.defcon.predictors.Predictor

Makes a density map prediction from a 2D image.

Predictor - Interface in ch.epfl.leb.defcon.predictors

Makes density map predictions from images.

R

run(ImageProcessor) - Method in class ch.epfl.leb.defcon.ij.DensityCount

Computes a density map from the selected image stack.

run(String) - Method in class ch.epfl.leb.defcon.ij.gui.RunDensityCount

run(String) - Method in class ch.epfl.leb.defcon.ij.gui.RunMaxCountFCN

run(ImageProcessor) - Method in class ch.epfl.leb.defcon.ij.MaxCountFCN

RunDensityCount - Class in ch.epfl.leb.defcon.ij.gui

Launches the density count DEFCoN plugin.

RunDensityCount() - Constructor for class ch.epfl.leb.defcon.ij.gui.RunDensityCount

RunMaxCountFCN - Class in ch.epfl.leb.defcon.ij.gui

Launches the maximum local count DEFCoN plugin.

RunMaxCountFCN() - Constructor for class ch.epfl.leb.defcon.ij.gui.RunMaxCountFCN

S

SessionClosedException - Exception in ch.epfl.leb.defcon.predictors

Raised when a prediction is requested but the TensorFlow session has already been closed.

SessionClosedException(String) - Constructor for exception ch.epfl.leb.defcon.predictors.SessionClosedException

setup(String, ImagePlus) - Method in class ch.epfl.leb.defcon.ij.DensityCount

Sets up the PlugInFilter.

setup(String, ImagePlus) - Method in class ch.epfl.leb.defcon.ij.MaxCountFCN

Sets up the PlugInFilter.

setup(String) - Method in class ch.epfl.leb.defcon.predictors.internal.AbstractPredictor

Initializes the predictor.

setup(String) - Method in interface ch.epfl.leb.defcon.predictors.Predictor

Initializes the predictor with a saved TensorFlow model bundle.

T

tfSession - Variable in class ch.epfl.leb.defcon.predictors.internal.AbstractPredictor

A copy of the current TensorFlow session.

U

UninitializedPredictorException - Exception in ch.epfl.leb.defcon.predictors

Raised when a predictor has not yet been fully initialized.

UninitializedPredictorException(String) - Constructor for exception ch.epfl.leb.defcon.predictors.UninitializedPredictorException

A C D E F G I M N P R S T U