ch.epfl.leb.defcon.ij

Class DensityCount

java.lang.Object

ch.epfl.leb.defcon.ij.DensityCount

All Implemented Interfaces:

PlugInFilter

public class DensityCount
extends Object
implements PlugInFilter

Computes a density map estimate for counting objects within an image.

Author:

Baptiste Ottino

Field Summary

Fields inherited from interface ij.plugin.filter.PlugInFilter

CONVERT_TO_FLOAT, DOES_16, DOES_32, DOES_8C, DOES_8G, DOES_ALL, DOES_RGB, DOES_STACKS, DONE, FINAL_PROCESSING, KEEP_THRESHOLD, NO_CHANGES, NO_IMAGE_REQUIRED, NO_UNDO, PARALLELIZE_IMAGES, PARALLELIZE_STACKS, ROI_REQUIRED, SNAPSHOT, STACK_REQUIRED, SUPPORTS_MASKING

Constructor Summary

Constructors

Constructor and Description
DensityCount()

Method Summary

Modifier and Type	Method and Description
void	run(ImageProcessor ip) Computes a density map from the selected image stack.
int	setup(String pathToModel, ImagePlus imp) Sets up the PlugInFilter.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DensityCount

public DensityCount()

Method Detail

run

public void run(ImageProcessor ip)

Computes a density map from the selected image stack. A results table that indicates the count is displayed in addition to the density map image.

Specified by:

run in interface PlugInFilter

Parameters:

ip - The input image processor.

setup

public int setup(String pathToModel,
                 ImagePlus imp)

Sets up the PlugInFilter.

Specified by:

setup in interface PlugInFilter

Parameters:

pathToModel - The path to a saved TensorFlow model bundle.

imp - The currently active image.

Returns:

A flag indicating which types of images this plugin handles.

See Also:

PlugInFilter